3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUAGU(A2M)(OMG)C*GCGAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_059 not in the Motif Atlas
Geometric match to IL_4V9F_012
Geometric discrepancy: 0.2494
The information below is about IL_4V9F_012
Detailed Annotation
8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_59724.1
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
Number of instances in this motif group
1

Unit IDs

7MPJ|1|A1|G|1444
7MPJ|1|A1|U|1445
7MPJ|1|A1|A|1446
7MPJ|1|A1|G|1447
7MPJ|1|A1|U|1448
7MPJ|1|A1|A2M|1449
7MPJ|1|A1|OMG|1450
7MPJ|1|A1|C|1451
*
7MPJ|1|A1|G|2353
7MPJ|1|A1|C|2354
7MPJ|1|A1|G|2355
7MPJ|1|A1|A|2356
7MPJ|1|A1|A|2357
7MPJ|1|A1|A|2358
7MPJ|1|A1|C|2359

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A4
5.8S ribosomal RNA; 5.8S rRNA
Chain AC
60S ribosomal protein L4-A
Chain AP
60S ribosomal protein L17-A

Coloring options:


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