IL_7MPJ_077
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 7MPJ|1|A1|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_077 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.0919
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
7MPJ|1|A1|A|1901
7MPJ|1|A1|G|1902
7MPJ|1|A1|U|1903
7MPJ|1|A1|C|1904
7MPJ|1|A1|G|1905
7MPJ|1|A1|G|1906
*
7MPJ|1|A1|C|2333
7MPJ|1|A1|U|2334
7MPJ|1|A1|G|2335
7MPJ|1|A1|U|2336
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L3
- Chain AV
- 60S ribosomal protein L23-A
Coloring options: