IL_7MPJ_089

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_089 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1094

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7MPJ|1|A1|U|2211
7MPJ|1|A1|C|2212
7MPJ|1|A1|A|2213
7MPJ|1|A1|A|2214
7MPJ|1|A1|A|2215
7MPJ|1|A1|G|2216
7MPJ|1|A1|U|2217
*
7MPJ|1|A1|A|2228
7MPJ|1|A1|A|2229
7MPJ|1|A1|C|2230
7MPJ|1|A1|C|2231
7MPJ|1|A1|A|2232
7MPJ|1|A1|A|2233
7MPJ|1|A1|G|2234

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ai

60S ribosomal protein L36-A