IL_7MPJ_102
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGAU*A(PSU)ACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_102 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3482
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
7MPJ|1|A1|U|2718
7MPJ|1|A1|U|2719
7MPJ|1|A1|G|2720
7MPJ|1|A1|A|2721
7MPJ|1|A1|U|2722
*
7MPJ|1|A1|A|2734
7MPJ|1|A1|PSU|2735
7MPJ|1|A1|A|2736
7MPJ|1|A1|C|2737
7MPJ|1|A1|A|2738
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AD
- 60S ribosomal protein L5
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- 60S ribosomal protein L29
- Chain Ao
- 60S ribosomal protein L42-A
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