IL_7MPJ_106

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7MPJ|1|A1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_106 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.0907

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7MPJ|1|A1|G|2828
7MPJ|1|A1|U|2829
7MPJ|1|A1|G|2830
*
7MPJ|1|A1|U|2858
7MPJ|1|A1|U|2859
7MPJ|1|A1|U|2860
7MPJ|1|A1|U|2861
7MPJ|1|A1|U|2862

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AI

60S ribosomal protein L10