3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUG*UUUUU
Length
8 nucleotides
Bulged bases
7MPJ|1|A1|U|2860
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_106 not in the Motif Atlas
Homologous match to IL_8C3A_113
Geometric discrepancy: 0.0907
The information below is about IL_8C3A_113
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

7MPJ|1|A1|G|2828
7MPJ|1|A1|U|2829
7MPJ|1|A1|G|2830
*
7MPJ|1|A1|U|2858
7MPJ|1|A1|U|2859
7MPJ|1|A1|U|2860
7MPJ|1|A1|U|2861
7MPJ|1|A1|U|2862

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AB
60S ribosomal protein L3
Chain AI
60S ribosomal protein L10

Coloring options:


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