3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CC*GUUG
Length
6 nucleotides
Bulged bases
7MPJ|1|A1|U|3354, 7MPJ|1|A1|U|3355
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_140 not in the Motif Atlas
Homologous match to IL_8C3A_142
Geometric discrepancy: 0.2781
The information below is about IL_8C3A_142
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

7MPJ|1|A1|C|3349
7MPJ|1|A1|C|3350
*
7MPJ|1|A1|G|3353
7MPJ|1|A1|U|3354
7MPJ|1|A1|U|3355
7MPJ|1|A1|G|3356

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AU
60S ribosomal protein L22-A
Chain BI
40S ribosomal protein S8-A

Coloring options:


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