IL_7MPJ_140

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

7MPJ|1|A1|U|3354, 7MPJ|1|A1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_140 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.2781

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7MPJ|1|A1|C|3349
7MPJ|1|A1|C|3350
*
7MPJ|1|A1|G|3353
7MPJ|1|A1|U|3354
7MPJ|1|A1|U|3355
7MPJ|1|A1|G|3356

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AU

60S ribosomal protein L22-A

Chain BI

40S ribosomal protein S8-A