IL_7MPJ_148
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_148 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0597
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|A4|A|44
7MPJ|1|A4|C|45
7MPJ|1|A4|G|46
7MPJ|1|A4|C|47
7MPJ|1|A4|A|48
7MPJ|1|A4|G|49
7MPJ|1|A4|C|50
7MPJ|1|A4|G|51
7MPJ|1|A4|A|52
7MPJ|1|A4|A|53
7MPJ|1|A4|A|54
7MPJ|1|A4|U|55
7MPJ|1|A4|G|56
7MPJ|1|A4|C|57
7MPJ|1|A4|G|58
7MPJ|1|A4|A|59
7MPJ|1|A4|U|60
7MPJ|1|A4|A|61
7MPJ|1|A4|C|62
7MPJ|1|A4|G|63
7MPJ|1|A4|U|64
*
7MPJ|1|A4|A|96
7MPJ|1|A4|A|97
7MPJ|1|A4|U|98
7MPJ|1|A4|C|99
7MPJ|1|A4|U|100
Current chains
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 60S ribosomal protein L25
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
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