3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CCAAU*AG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_174 not in the Motif Atlas
Geometric match to IL_5J7L_018
Geometric discrepancy: 0.1101
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

7MPJ|1|B5|C|443
7MPJ|1|B5|C|444
7MPJ|1|B5|A|445
7MPJ|1|B5|A|446
7MPJ|1|B5|U|447
*
7MPJ|1|B5|A|460
7MPJ|1|B5|G|461

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BJ
40S ribosomal protein S9-A
Chain BY
40S ribosomal protein S24-A

Coloring options:


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