IL_7MPJ_186

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_186 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.1917

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7MPJ|1|B5|C|646
7MPJ|1|B5|G|647
7MPJ|1|B5|G|648
*
7MPJ|1|B5|C|686
7MPJ|1|B5|G|687
7MPJ|1|B5|G|688

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BW

40S ribosomal protein S22-A