IL_7MPJ_188
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_188 not in the Motif Atlas
- Geometric match to IL_4V88_423
- Geometric discrepancy: 0.1647
- The information below is about IL_4V88_423
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 19
Unit IDs
7MPJ|1|B5|A|746
7MPJ|1|B5|C|747
*
7MPJ|1|B5|G|802
7MPJ|1|B5|A|803
7MPJ|1|B5|A|804
7MPJ|1|B5|U|805
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BH
- 40S ribosomal protein S7-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BW
- 40S ribosomal protein S22-A
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: