3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AUAAGGAUUG*CUUGAUUU
Length
18 nucleotides
Bulged bases
7MPJ|1|B5|G|1228
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_210 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.4128
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7MPJ|1|B5|A|1224
7MPJ|1|B5|U|1225
7MPJ|1|B5|A|1226
7MPJ|1|B5|A|1227
7MPJ|1|B5|G|1228
7MPJ|1|B5|G|1229
7MPJ|1|B5|A|1230
7MPJ|1|B5|U|1231
7MPJ|1|B5|U|1232
7MPJ|1|B5|G|1233
*
7MPJ|1|B5|C|1252
7MPJ|1|B5|U|1253
7MPJ|1|B5|U|1254
7MPJ|1|B5|G|1255
7MPJ|1|B5|A|1256
7MPJ|1|B5|U|1257
7MPJ|1|B5|U|1258
7MPJ|1|B5|U|1259

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BK
40S ribosomal protein S10-A
Chain BM
40S ribosomal protein S12
Chain Bd
40S ribosomal protein S29-A
Chain Bf
40S ribosomal protein S31

Coloring options:


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