3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
7MPJ|1|B5|C|1274
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_213 not in the Motif Atlas
Geometric match to IL_4LFB_044
Geometric discrepancy: 0.1002
The information below is about IL_4LFB_044
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_76319.5
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

7MPJ|1|B5|U|1272
7MPJ|1|B5|G|1273
7MPJ|1|B5|C|1274
7MPJ|1|B5|A|1275
7MPJ|1|B5|U|1276
*
7MPJ|1|B5|A|1436
7MPJ|1|B5|U|1437
7MPJ|1|B5|G|1438

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BD
40S ribosomal protein S3
Chain BK
40S ribosomal protein S10-A
Chain BU
40S ribosomal protein S20
Chain Bd
40S ribosomal protein S29-A
Chain Bh
Suppressor protein STM1

Coloring options:


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