3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
7MPJ|1|B5|C|1637, 7MPJ|1|B5|A|1766
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_227 not in the Motif Atlas
Geometric match to IL_5J7L_058
Geometric discrepancy: 0.1053
The information below is about IL_5J7L_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

7MPJ|1|B5|C|1636
7MPJ|1|B5|C|1637
7MPJ|1|B5|G|1638
*
7MPJ|1|B5|C|1764
7MPJ|1|B5|A|1765
7MPJ|1|B5|A|1766
7MPJ|1|B5|G|1767

Current chains

Chain B5
18S rRNA

Nearby chains

Chain Ba
40S ribosomal protein S26-A
Chain Bh
Suppressor protein STM1

Coloring options:


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