IL_7MPJ_228

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(OMC)CC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_228 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1005

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7MPJ|1|B5|G|1638
7MPJ|1|B5|OMC|1639
7MPJ|1|B5|C|1640
7MPJ|1|B5|C|1641
*
7MPJ|1|B5|G|1760
7MPJ|1|B5|U|1761
7MPJ|1|B5|A|1762
7MPJ|1|B5|A|1763
7MPJ|1|B5|C|1764

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

60S ribosomal protein L41-A

Chain Bh

Suppressor protein STM1