IL_7MPJ_232

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_232 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.0809

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7MPJ|1|B5|C|1653
7MPJ|1|B5|G|1654
7MPJ|1|B5|A|1655
7MPJ|1|B5|U|1656
*
7MPJ|1|B5|A|1744
7MPJ|1|B5|G|1745
7MPJ|1|B5|A|1746
7MPJ|1|B5|G|1747

Current chains

Chain B5

18S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

60S ribosomal protein L41-A