3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGAU*AGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_232 not in the Motif Atlas
Geometric match to IL_4V88_468
Geometric discrepancy: 0.0809
The information below is about IL_4V88_468
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.12
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
35

Unit IDs

7MPJ|1|B5|C|1653
7MPJ|1|B5|G|1654
7MPJ|1|B5|A|1655
7MPJ|1|B5|U|1656
*
7MPJ|1|B5|A|1744
7MPJ|1|B5|G|1745
7MPJ|1|B5|A|1746
7MPJ|1|B5|G|1747

Current chains

Chain B5
18S rRNA

Nearby chains

Chain A1
Large subunit ribosomal RNA; LSU rRNA
Chain An
60S ribosomal protein L41-A

Coloring options:


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