IL_7MPJ_233
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUG*UA
- Length
- 5 nucleotides
- Bulged bases
- 7MPJ|1|B5|U|1657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_233 not in the Motif Atlas
- Geometric match to IL_4V88_469
- Geometric discrepancy: 0.2043
- The information below is about IL_4V88_469
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
7MPJ|1|B5|U|1656
7MPJ|1|B5|U|1657
7MPJ|1|B5|G|1658
*
7MPJ|1|B5|U|1743
7MPJ|1|B5|A|1744
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AV
- 60S ribosomal protein L23-A
- Chain An
- 60S ribosomal protein L41-A
- Chain BX
- 40S ribosomal protein S23-A
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