3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUCA*UUUG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_237 not in the Motif Atlas
Geometric match to IL_4V88_473
Geometric discrepancy: 0.1346
The information below is about IL_4V88_473
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

7MPJ|1|B5|C|1675
7MPJ|1|B5|U|1676
7MPJ|1|B5|C|1677
7MPJ|1|B5|A|1678
*
7MPJ|1|B5|U|1723
7MPJ|1|B5|U|1724
7MPJ|1|B5|U|1725
7MPJ|1|B5|G|1726

Current chains

Chain B5
18S rRNA

Nearby chains

Chain A1
Large subunit ribosomal RNA; LSU rRNA
Chain AW
60S ribosomal protein L24-A
Chain BG
40S ribosomal protein S6-A
Chain BI
40S ribosomal protein S8-A

Coloring options:


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