IL_7MPJ_263

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAGUAC*GGAACA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MPJ_263 not in the Motif Atlas

Geometric match to IL_8VTW_007

Geometric discrepancy: 0.2683

The information below is about IL_8VTW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7MPJ|1|A1|U|3019
7MPJ|1|A1|U|3020
7MPJ|1|A1|A|3021
7MPJ|1|A1|G|3022
7MPJ|1|A1|U|3023
7MPJ|1|A1|A|3024
7MPJ|1|A1|C|3025
*
7MPJ|1|A1|G|3030
7MPJ|1|A1|G|3031
7MPJ|1|A1|A|3032
7MPJ|1|A1|A|3033
7MPJ|1|A1|C|3034
7MPJ|1|A1|A|3035

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L9-A

Chain AV

60S ribosomal protein L23-A