3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUUA*(PSU)UUC
Length
8 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7MPJ_265 not in the Motif Atlas
Homologous match to IL_8C3A_399
Geometric discrepancy: 0.2361
The information below is about IL_8C3A_399
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_54697.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
51

Unit IDs

7MPJ|1|B5|G|109
7MPJ|1|B5|U|110
7MPJ|1|B5|U|111
7MPJ|1|B5|A|112
*
7MPJ|1|B5|PSU|302
7MPJ|1|B5|U|303
7MPJ|1|B5|U|304
7MPJ|1|B5|C|305

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BE
40S ribosomal protein S4-A
Chain BI
40S ribosomal protein S8-A
Chain BL
40S ribosomal protein S11-A

Coloring options:


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