IL_7MPJ_270
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAAAAAU(PSU)*AUAUU(A2M)GC
- Length
- 17 nucleotides
- Bulged bases
- 7MPJ|1|B5|U|794
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MPJ_270 not in the Motif Atlas
- Homologous match to IL_8P9A_414
- Geometric discrepancy: 0.3429
- The information below is about IL_8P9A_414
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|B5|G|751
7MPJ|1|B5|A|752
7MPJ|1|B5|A|753
7MPJ|1|B5|A|754
7MPJ|1|B5|A|755
7MPJ|1|B5|A|756
7MPJ|1|B5|A|757
7MPJ|1|B5|U|758
7MPJ|1|B5|PSU|759
*
7MPJ|1|B5|A|791
7MPJ|1|B5|U|792
7MPJ|1|B5|A|793
7MPJ|1|B5|U|794
7MPJ|1|B5|U|795
7MPJ|1|B5|A2M|796
7MPJ|1|B5|G|797
7MPJ|1|B5|C|798
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4-A
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BW
- 40S ribosomal protein S22-A
Coloring options: