IL_7MQ8_025

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGAUCA*UUGGCUAG

Length

15 nucleotides

Bulged bases

7MQ8|1|L1|U|227

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MQ8|1|L1|C|223
7MQ8|1|L1|A|224
7MQ8|1|L1|G|225
7MQ8|1|L1|A|226
7MQ8|1|L1|U|227
7MQ8|1|L1|C|228
7MQ8|1|L1|A|229
*
7MQ8|1|L1|U|286
7MQ8|1|L1|U|287
7MQ8|1|L1|G|288
7MQ8|1|L1|G|289
7MQ8|1|L1|C|295
7MQ8|1|L1|U|296
7MQ8|1|L1|A|297
7MQ8|1|L1|G|298

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4, X isoform

Chain L8

40S ribosomal protein S8

Chain LD

40S ribosomal protein S11