IL_7MQ8_035
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 7MQ8|1|L1|U|368, 7MQ8|1|L1|C|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQ8_035 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.2526
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37738.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MQ8|1|L1|U|366
7MQ8|1|L1|U|367
7MQ8|1|L1|U|368
7MQ8|1|L1|C|369
7MQ8|1|L1|G|370
7MQ8|1|L1|A|371
*
7MQ8|1|L1|U|393
7MQ8|1|L1|G|394
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L8
- 40S ribosomal protein S8
- Chain LD
- 40S ribosomal protein S11
- Chain NN
- Protein AATF
- Chain NW
- Nucleolar protein 10
- Chain NY
- KRR1 small subunit processome component homolog
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