IL_7MQ8_044
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAG*CGAGGAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQ8_044 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1341
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
7MQ8|1|L1|G|563
7MQ8|1|L1|A|564
7MQ8|1|L1|G|565
*
7MQ8|1|L1|C|585
7MQ8|1|L1|G|586
7MQ8|1|L1|A|587
7MQ8|1|L1|G|588
7MQ8|1|L1|G|589
7MQ8|1|L1|A|590
7MQ8|1|L1|U|591
7MQ8|1|L1|C|592
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L9
- 40S ribosomal protein S9
- Chain NB
- Something about silencing protein 10
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
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