IL_7MQ8_047

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_047 not in the Motif Atlas

Homologous match to IL_4V88_417

Geometric discrepancy: 0.1184

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7MQ8|1|L1|G|673
7MQ8|1|L1|C|674
7MQ8|1|L1|U|675
*
7MQ8|1|L1|A|1030
7MQ8|1|L1|A|1031
7MQ8|1|L1|C|1032

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NF

40S ribosomal protein S13

Chain NY

KRR1 small subunit processome component homolog