IL_7MQ8_063

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

7MQ8|1|L1|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_063 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.3334

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7MQ8|1|L1|A|1282
7MQ8|1|L1|C|1283
7MQ8|1|L1|A|1284
7MQ8|1|L1|G|1285
7MQ8|1|L1|G|1286
7MQ8|1|L1|A|1287
*
7MQ8|1|L1|U|1314
7MQ8|1|L1|U|1315

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LA

40S ribosomal protein S12

Chain NT

Ubiquitin-40S ribosomal protein S27a

Chain SZ

Bystin