IL_7MQ8_066

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

7MQ8|1|L1|A|1498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_066 not in the Motif Atlas

Geometric match to IL_3OXE_001

Geometric discrepancy: 0.3575

The information below is about IL_3OXE_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7MQ8|1|L1|G|1330
7MQ8|1|L1|C|1331
*
7MQ8|1|L1|G|1497
7MQ8|1|L1|A|1498
7MQ8|1|L1|U|1499

Current chains

Chain L1

18S rRNA

Nearby chains

Chain SJ

Ribosomal RNA small subunit methyltransferase NEP1

Chain SZ

Bystin