IL_7MQ8_080

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCCC*GGAGCG

Length

10 nucleotides

Bulged bases

7MQ8|1|L1|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_080 not in the Motif Atlas

Geometric match to IL_4DB2_001

Geometric discrepancy: 0.3508

The information below is about IL_4DB2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61988.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7MQ8|1|L1|C|1750
7MQ8|1|L1|C|1751
7MQ8|1|L1|C|1752
7MQ8|1|L1|C|1753
*
7MQ8|1|L1|G|1779
7MQ8|1|L1|G|1780
7MQ8|1|L1|A|1781
7MQ8|1|L1|G|1782
7MQ8|1|L1|C|1783
7MQ8|1|L1|G|1784

Current chains

Chain L1

18S rRNA

Nearby chains