IL_7MQ8_093

3D structure

PDB id

7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGGAUC*GAGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ8_093 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.2992

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7MQ8|1|L1|C|1742
7MQ8|1|L1|G|1743
7MQ8|1|L1|G|1744
7MQ8|1|L1|A|1745
7MQ8|1|L1|U|1746
7MQ8|1|L1|C|1747
*
7MQ8|1|L1|G|1787
7MQ8|1|L1|A|1788
7MQ8|1|L1|G|1789
7MQ8|1|L1|A|1790
7MQ8|1|L1|A|1791
7MQ8|1|L1|G|1792

Current chains

Chain L1

18S rRNA

Nearby chains