IL_7MQ9_019

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

7MQ9|1|L1|G|113, 7MQ9|1|L1|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ9_019 not in the Motif Atlas

Geometric match to IL_5W1H_001

Geometric discrepancy: 0.2391

The information below is about IL_5W1H_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

7MQ9|1|L1|U|112
7MQ9|1|L1|G|113
7MQ9|1|L1|G|114
7MQ9|1|L1|U|115
*
7MQ9|1|L1|A|348
7MQ9|1|L1|A|349

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4 X isoform

Chain L8

40S ribosomal protein S8

Chain LD

40S ribosomal protein S11