IL_7MQ9_095

3D structure

PDB id

7MQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state pre-A1*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.87 Å

Loop

Sequence

CGGAUC*GAGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQ9_095 not in the Motif Atlas

Geometric match to IL_8C3A_028

Geometric discrepancy: 0.2935

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7MQ9|1|L1|C|1742
7MQ9|1|L1|G|1743
7MQ9|1|L1|G|1744
7MQ9|1|L1|A|1745
7MQ9|1|L1|U|1746
7MQ9|1|L1|C|1747
*
7MQ9|1|L1|G|1787
7MQ9|1|L1|A|1788
7MQ9|1|L1|G|1789
7MQ9|1|L1|A|1790
7MQ9|1|L1|A|1791
7MQ9|1|L1|G|1792

Current chains

Chain L1

18S rRNA

Nearby chains