IL_7MQA_001
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGCAU*A(PSU)A(PSU)U
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_001 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3877
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
7MQA|1|L1|A|22
7MQA|1|L1|G|23
7MQA|1|L1|C|24
7MQA|1|L1|A|25
7MQA|1|L1|U|26
*
7MQA|1|L1|A|648
7MQA|1|L1|PSU|649
7MQA|1|L1|A|650
7MQA|1|L1|PSU|651
7MQA|1|L1|U|652
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L2
- U3 small nucleolar RNA; U3 snoRNA
- Chain L9
- 40S ribosomal protein S9
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SL
- rRNA-processing protein FCF1 homolog
- Chain SR
- 40S ribosomal protein S23
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