IL_7MQA_006
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 7MQA|1|L1|C|65, 7MQA|1|L1|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_006 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1937
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MQA|1|L1|U|63
7MQA|1|L1|A|64
7MQA|1|L1|C|65
7MQA|1|L1|G|66
7MQA|1|L1|C|67
7MQA|1|L1|A|68
*
7MQA|1|L1|U|81
7MQA|1|L1|G|82
7MQA|1|L1|A|83
7MQA|1|L1|A|84
7MQA|1|L1|A|85
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L6
- 40S ribosomal protein S6
- Chain LF
- 40S ribosomal protein S24
- Chain SP
- Small subunit processome component 20 homolog
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