IL_7MQA_042

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGC*GCCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_042 not in the Motif Atlas

Geometric match to IL_8C3A_009

Geometric discrepancy: 0.3968

The information below is about IL_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7MQA|1|L1|G|691
7MQA|1|L1|G|692
7MQA|1|L1|A|693
7MQA|1|L1|G|694
7MQA|1|L1|C|695
*
7MQA|1|L1|G|737
7MQA|1|L1|C|738
7MQA|1|L1|C|739
7MQA|1|L1|C|740

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L7

40S ribosomal protein S7

Chain SP

Small subunit processome component 20 homolog