IL_7MQA_044

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUCU*AAG

Length

8 nucleotides

Bulged bases

7MQA|1|L1|A|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_044 not in the Motif Atlas

Geometric match to IL_7RQB_104

Geometric discrepancy: 0.1431

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7MQA|1|L1|C|745
7MQA|1|L1|C|746
7MQA|1|L1|U|747
7MQA|1|L1|C|748
7MQA|1|L1|U|749
*
7MQA|1|L1|A|794
7MQA|1|L1|A|795
7MQA|1|L1|G|796

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LD

40S ribosomal protein S11

Chain SP

Small subunit processome component 20 homolog