IL_7MQA_060
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_060 not in the Motif Atlas
- Geometric match to IL_4V88_438
- Geometric discrepancy: 0.1648
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7MQA|1|L1|C|1098
7MQA|1|L1|G|1099
7MQA|1|L1|A|1100
7MQA|1|L1|U|1101
*
7MQA|1|L1|G|1131
7MQA|1|L1|C|1132
7MQA|1|L1|A|1133
7MQA|1|L1|G|1134
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LU
- DDB1- and CUL4-associated factor 13
- Chain LW
- WD repeat-containing protein 46
- Chain NF
- 40S ribosomal protein S13
- Chain NM
- 40S ribosomal protein S3a
- Chain NQ
- 40S ribosomal protein S27
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