IL_7MQA_065
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GA*UUCACACCG(OMC)C
- Length
- 13 nucleotides
- Bulged bases
- 7MQA|1|L1|U|1692, 7MQA|1|L1|C|1696
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_065 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.1334
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
7MQA|1|L1|G|1207
7MQA|1|L1|A|1208
*
7MQA|1|L1|U|1691
7MQA|1|L1|U|1692
7MQA|1|L1|C|1696
7MQA|1|L1|A|1697
7MQA|1|L1|C|1698
7MQA|1|L1|A|1699
7MQA|1|L1|C|1700
7MQA|1|L1|C|1701
7MQA|1|L1|G|1702
7MQA|1|L1|OMC|1703
7MQA|1|L1|C|1704
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LO
- Periodic tryptophan protein 2 homolog
- Chain LQ
- WD repeat-containing protein 3
- Chain LR
- Transducin beta-like protein 3
- Chain NA
- U3 small nucleolar ribonucleoprotein protein MPP10
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