IL_7MQA_080
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7MQA_080 not in the Motif Atlas
- Geometric match to IL_4P3T_001
- Geometric discrepancy: 0.1337
- The information below is about IL_4P3T_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
7MQA|1|L1|A|1537
7MQA|1|L1|C|1538
7MQA|1|L1|U|1539
*
7MQA|1|L1|A|1594
7MQA|1|L1|U|1595
7MQA|1|L1|U|1596
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L3
- 40S ribosomal protein S18
- Chain L5
- 40S ribosomal protein S5
- Chain LC
- 40S ribosomal protein S16
- Chain LJ
- U3 small nucleolar RNA-associated protein 15 homolog
- Chain NP
- 40S ribosomal protein S19
Coloring options: