IL_7MQA_088

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_088 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.2265

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7MQA|1|L1|U|1733
7MQA|1|L1|G|1734
7MQA|1|L1|A|1735
7MQA|1|L1|G|1736
*
7MQA|1|L1|C|1798
7MQA|1|L1|G|1799
7MQA|1|L1|A|1800
7MQA|1|L1|A|1801

Current chains

Chain L1

18S rRNA

Nearby chains

Chain LR

Transducin beta-like protein 3

Chain NS

Probable ATP-dependent RNA helicase DHX37