IL_7MQA_090

3D structure

PDB id

7MQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human SSU processome, state post-A1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MQA_090 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2561

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7MQA|1|L1|C|1742
7MQA|1|L1|G|1743
7MQA|1|L1|G|1744
7MQA|1|L1|A|1745
7MQA|1|L1|U|1746
*
7MQA|1|L1|A|1788
7MQA|1|L1|G|1789
7MQA|1|L1|A|1790
7MQA|1|L1|A|1791
7MQA|1|L1|G|1792

Current chains

Chain L1

18S rRNA

Nearby chains