IL_7MSH_022

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7MSH|1|A|G|930, 7MSH|1|A|G|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSH_022 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1699

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7MSH|1|A|G|803
7MSH|1|A|A|804
7MSH|1|A|A|805
7MSH|1|A|G|806
7MSH|1|A|C|807
*
7MSH|1|A|G|928
7MSH|1|A|U|929
7MSH|1|A|G|930
7MSH|1|A|A|931
7MSH|1|A|U|932
7MSH|1|A|A|933
7MSH|1|A|G|934
7MSH|1|A|C|935

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15