IL_7MSH_105

3D structure

PDB id

7MSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Pre_R1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGG*CCAG

Length

7 nucleotides

Bulged bases

7MSH|1|B|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSH_105 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.3298

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

7MSH|1|B|C|16
7MSH|1|B|G|17
7MSH|1|B|G|18
*
7MSH|1|B|C|63
7MSH|1|B|C|64
7MSH|1|B|A|65
7MSH|1|B|G|66

Current chains

Chain B

5S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA