IL_7MSM_015

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

7MSM|1|A|G|592, 7MSM|1|A|A|596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_015 not in the Motif Atlas

Geometric match to IL_5TBW_014

Geometric discrepancy: 0.1193

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7MSM|1|A|G|570
7MSM|1|A|U|571
7MSM|1|A|A|572
7MSM|1|A|C|573
*
7MSM|1|A|G|584
7MSM|1|A|A|585
7MSM|1|A|G|586
7MSM|1|A|U|587
7MSM|1|A|G|588
7MSM|1|A|A|589
7MSM|1|A|A|590
7MSM|1|A|A|591
7MSM|1|A|G|592
7MSM|1|A|A|593
7MSM|1|A|G|594
7MSM|1|A|U|595
7MSM|1|A|A|596
7MSM|1|A|C|597

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24