IL_7MSM_041

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_041 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.105

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7MSM|1|A|C|1133
7MSM|1|A|C|1134
7MSM|1|A|C|1135
7MSM|1|A|C|1136
7MSM|1|A|C|1137
7MSM|1|A|A|1138
7MSM|1|A|A|1139
7MSM|1|A|G|1140
*
7MSM|1|A|C|1280
7MSM|1|A|G|1281

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L37

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20