IL_7MSM_065

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CGGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_065 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3708

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7MSM|1|A|C|1711
7MSM|1|A|G|1712
7MSM|1|A|G|1713
7MSM|1|A|U|1714
7MSM|1|A|A|1715
7MSM|1|A|G|1716
*
7MSM|1|A|U|1752
7MSM|1|A|G|1753
7MSM|1|A|A|1754
7MSM|1|A|G|1755
7MSM|1|A|A|1756
7MSM|1|A|G|1757

Current chains

Chain A

23S rRNA

Nearby chains