IL_7MSM_138

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GGAUGACG*UGUAAAC

Length

15 nucleotides

Bulged bases

7MSM|1|a|U|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7MSM_138 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2168

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7MSM|1|a|G|408
7MSM|1|a|G|409
7MSM|1|a|A|410
7MSM|1|a|U|411
7MSM|1|a|G|412
7MSM|1|a|A|413
7MSM|1|a|C|414
7MSM|1|a|G|415
*
7MSM|1|a|U|426
7MSM|1|a|G|427
7MSM|1|a|U|428
7MSM|1|a|A|429
7MSM|1|a|A|430
7MSM|1|a|A|431
7MSM|1|a|C|432

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4