IL_7N1P_012

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7N1P|1|16|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1099

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7N1P|1|16|G|147
7N1P|1|16|G|148
7N1P|1|16|A|149
7N1P|1|16|U|150
7N1P|1|16|A|151
7N1P|1|16|A|152
7N1P|1|16|C|153
*
7N1P|1|16|G|168
7N1P|1|16|C|169
7N1P|1|16|U|170
7N1P|1|16|A|171
7N1P|1|16|A|172
7N1P|1|16|U|173
7N1P|1|16|A|174
7N1P|1|16|C|175

Current chains

Chain 16

16S rRNA

Nearby chains

Chain ST

30S ribosomal protein S20