IL_7N1P_032

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_032 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.063

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

7N1P|1|16|G|654
7N1P|1|16|A|655
*
7N1P|1|16|U|751
7N1P|1|16|G|752
7N1P|1|16|A|753
7N1P|1|16|C|754

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SH

30S ribosomal protein S8

Chain SO

30S ribosomal protein S15