IL_7N1P_039

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_039 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.06

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7N1P|1|16|G|887
7N1P|1|16|G|888
7N1P|1|16|A|889
7N1P|1|16|G|890
7N1P|1|16|U|891
7N1P|1|16|A|892
7N1P|1|16|C|893
7N1P|1|16|G|894
*
7N1P|1|16|U|905
7N1P|1|16|A|906
7N1P|1|16|A|907
7N1P|1|16|A|908
7N1P|1|16|A|909
7N1P|1|16|C|910

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12