3D structure

PDB id
7N1P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GG*UCAUC
Length
7 nucleotides
Bulged bases
7N1P|1|16|C|1200, 7N1P|1|16|A|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7N1P_049 not in the Motif Atlas
Homologous match to IL_5J7L_048
Geometric discrepancy: 0.0785
The information below is about IL_5J7L_048
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

7N1P|1|16|G|1057
7N1P|1|16|G|1058
*
7N1P|1|16|U|1199
7N1P|1|16|C|1200
7N1P|1|16|A|1201
7N1P|1|16|U|1202
7N1P|1|16|C|1203

Current chains

Chain 16
16S rRNA

Nearby chains

Chain SC
30S ribosomal protein S3
Chain SJ
30S ribosomal protein S10
Chain SN
30S ribosomal protein S14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.662 s