IL_7N1P_073

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_073 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0499

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7N1P|1|23|C|239
7N1P|1|23|C|240
7N1P|1|23|A|241
7N1P|1|23|G|242
7N1P|1|23|U|243
7N1P|1|23|A|244
7N1P|1|23|G|245
*
7N1P|1|23|C|253
7N1P|1|23|G|254
7N1P|1|23|A|255
7N1P|1|23|A|256
7N1P|1|23|C|257
7N1P|1|23|G|258

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LO

50S ribosomal protein L15

Chain Li

50S ribosomal protein L35